PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.RLC0G
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 272aa    MW: 30322.8 Da    PI: 6.3991
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.RLC0GgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-1265113455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h  +Er+RR+++N+ ++ Lr+l+P+    + k+ + a+i   +v+YI++Lq
  Aradu.RLC0G  65 SHITVERNRRKQMNHHLSVLRSLMPSF---YVKRGDQASIIGGVVDYINELQ 113
                  7999**********************9...9********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.76461112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1264124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-1564127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-1264117No hitNo description
PfamPF000105.2E-1065113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
METEKLPAMD NNTLLSETFL NTTQFGGEDL FSILESLEDL NSPPPPPRKR QKVTDADGEE  60
RVLSSHITVE RNRRKQMNHH LSVLRSLMPS FYVKRGDQAS IIGGVVDYIN ELQQVLQCLE  120
AKKNRKVFYT DNVLSPRLII PSPKLGPRIL TLPPISPRTP QPGSPWLHSI EPSPSSSGSD  180
NMNELVANSK SMIADVEVKF CGPHVLVKTV SPRIPGQAMR IVSALQDLAL EILHLTITTS  240
DETMLYSFTI KIGIECQLSA EELAQHIQQT FC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015971699.10.0PREDICTED: transcription factor SPEECHLESS
SwissprotQ700C76e-86SPCH_ARATH; Transcription factor SPEECHLESS
TrEMBLK7LXZ71e-108K7LXZ7_SOYBN; Uncharacterized protein
STRINGGLYMA13G08740.21e-108(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36863463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.19e-82bHLH family protein